Anion binding to ubiquitin and its relevance to the Hofmeister effects

Although the non-covalent interactions between proteins and salts contributing to the Hofmeister effects have been generally mapped, there are many questions regarding the specifics of these interactions. We report here studies involving the small protein ubiquitin and salts of polarizable anions. These studies reveal a complex interplay between the reverse Hofmeister effect at low pH, the salting-in Hofmeister effect at higher pH, and six anion binding sites in ubiquitin at the root of these phenomena. These sites are all located at protuberances of preorganized secondary structure, and although stronger at low pH, are still apparent when ubiquitin possesses no net charge. These results demonstrate the traceability of these Hofmeister phenomena and suggest new strategies for understanding the supramolecular properties of proteins.

Studying the supramolecular properties of Ubiquitin reveals six anion binding sites that contribute to the reverse Hofmeister effect at low pH and the salting-in Hofmeister effect at higher pH.     

Polymers from aryl glycidyl ethers

High molecular weight, linear polyethers were prepared by polymerizing a series of ring-substituted phenyl glycidyl ethers by using the ferric chloride–propylene oxide and dibutylzinc–water catalyst systems. The α-naphthyl, β-naphthyl, p-phenylphenyl, the o-, m-, and p-methyl, and the o- and p-chlorophenyl polymers resemble the parent polymer in that they are readily crystallizable polyethers which have melting points above 170°C. The other substituted poly(phenyl glycidyl ethers), including the o- and p-isopropyl, p-tert-butyl, p-octyl, and 2,4,6-trichloro derivatives show much less tendency to crystallize and are lower melting. The x-ray and electron diffraction data established that poly(o-chlorophenyl glycidyl ether) crystallizes in an orthorhombic unit cell; data obtained in a parallel study of unsubstituted poly(phenyl glycidyl ether) did not allow assignment of a specific structure.     

Encapsulation of ferrocene and peripheral electrostatic attachment of viologens to dimeric molecular capsules formed by an octaacid, deep-cavity cavitand

In aqueous media the deep-cavity cavitand octaacid 1 forms stable dimeric molecular capsules 1(2), which are stabilized by hydrophobic effects. In this work we investigate the binding interactions in aqueous solution between these capsules and the redox active guests, ferrocene (Fc) and three 4,4'-bipyridinium (viologen) dications: methyl viologen (MV(2+)), ethyl viologen (EV(2+)), and butyl viologen (BV(2+)). Using NMR spectroscopic and electrochemical techniques we clearly show that the hydrophobic Fc guest is encapsulated inside 1(2). An interesting effect of this encapsulation is that the reversible voltammetric response of Fc is completely eliminated when it resides inside the 1(2) capsular assembly, a finding that is attributed to very slow electrochemical kinetics for the oxidation of Fc@1(2). Diffusion coefficient measurements (PGSE NMR spectroscopy) reveal that all three viologen guests are strongly bound to the dimeric capsules. However, the (1)H NMR spectroscopic data are not consistent with encapsulation and the measured diffusion coefficients indicate that two viologen guests can strongly associate with a single dimeric capsule. Furthermore, the (V(2+))(2)*1(2) complex is capable of encapsulating ferrocene, clearly suggesting that the viologen guests are bound externally, via coulombic interactions, to the anionic polar ends of the capsule. The electrochemical kinetic rate constants for the reduction of the viologen residue in the V(2+)*1(2) complexes were measured and found to be substantially lower than those for the free viologen guests.     

Orbital Angular Momentum in Scalar Diquark Model and QED

We compare the orbital angular momentum of the ‘quark’ in the scalar diquark model as well as that of the electron in QED (to order α) obtained from the Jaffe–Manohar decomposition to that obtained from the Ji relation. We estimate the importance of the vector potential in the definition of orbital angular momentum.     

Chiral Photochemistry in a Confined Space: Torquoselective Photoelectrocyclization of Pyridones within an Achiral Hydrophobic Capsule

Chiral induction during the photoelectrocyclization of pyridones included within octa acid (OA) capsule has been established. Chiral induction is brought about by a chiral auxiliary appended to the reactive pyridone moiety. Importantly, the same chiral auxiliary while ineffective in acetonitrile solution is found to be effective within the confined space of OA capsule. The diastereomeric excess of 92% obtained here is comparable only to that in solid state. OA capsule, we believe, provides restriction to the rotational motions of the reactant pyridone and chiral auxiliary and thus places the chiral auxiliary in a selective conformation with respect to the reactive pyridone part. A correlation between the position of the methyl group on the pyridone ring and diastereoselectivity was noted. Structures of the host-guest complexes were examined by ¹H NMR and the data were used to obtain preliminary information concerning the mechanism of chiral induction within the confined spaces of OA capsule.     

Templated assembly of water-soluble nano-capsules: inter-phase sequestration, storage, and separation of hydrocarbon gases

In aqueous solution, a deep-cavity cavitand was shown to self-assemble into dimeric nano-capsules via the sequestration of gaseous-phase hydrocarbons. The sequestration, assembly, and entrapment process was shown to be dependent on the hydrocarbon. Thus, by way of example, butane could be selectively sequestered from a propane-butane mixture.     

Binding of cyclic carboxylates to octa-acid deep-cavity cavitand

As part of the fourth statistical assessment of modeling of proteins and ligands (sampl.eyesopen.com) prediction challenge, the strength of association of nine guests (1–9) binding to octa-acid host was determined by a combination of ¹H NMR and isothermal titration calorimetry. Association constants in sodium tetraborate buffered (pH 9.2) aqueous solution ranged from 5.39 × 10² M^?1 in the case of benzoate 1, up to 3.82 × 10⁵ M^?1 for trans-4-methylcyclohexanoate 7. Overall, the free energy difference between the free energies of complexation of these weakest and strongest binding guests was ΔΔG° = 3.88 kcal mol^?1. Based on a multitude of previous studies, the anticipated order of strength of binding was close to that which was actually obtained. However, the binding of guest 3 (4-ethylbenzoate) was considerably stronger than initially estimated.     

Anion binding to hydrophobic concavity is central to the salting-in effects of Hofmeister chaotropes

For over 120 years it has been appreciated that certain salts (kosmotropes) cause the precipitation of proteins, while others (chaotropes) increase their solubility. The cause of this "Hofmeister effect" is still unclear, especially with the original concept that kosmotropic anions "make" water structure and chaotropes "break" it being countered by recent studies suggesting otherwise. Here, we present the first direct evidence that chaotropic anions have an affinity for hydrophobic concavity and that it is competition between a convex hydrophobe and the anion for a binding site that leads to the apparent weakening of the hydrophobic effect by chaotropes. In combination, these results suggest that chaotropes primarily induce protein solubilization by direct binding to concavity in the molten globule state of a protein.     

Pulsed nuclear magnetic resonance and molecular reorientation in solid 1,3,5-trifluorobenzene

Single and double-pulse transient experiments have been used for the direct measurement of the resonant and non-resonant spin contributions to the ¹H and ¹⁹F second moments in polycrystalline 1,3,5,-C₆H₃F₃. The applicability of these experiments to molecular solids is examined. The temperature dependence of the experimental proton second moment has been investigated between 130 K and the melting point at 267·7 K; a transition centred on 200 K is observed. It is shown that the molecules have an ordered arrangement in the crystal at all temperatures and that this transition is due to thermally activated reorientational jumps of the molecules through 120° about their triad axes. The activation energy for this motion is 42·7 ± 2·9 kJ mol^-1 as determined from the temperature dependence of the ‘apparent’ second moment in the transition region.